pyproteome.discoverer package

This module provides functionality for accessing searched data from Proteome Discoverer.

pyproteome.discoverer.read_discoverer_msf(basename, msf_path=None, pick_best_psm=False)

Read a Proteome Discoverer .msf file.

Converts file contents into a pandas DataFrame similar to what one would get by exporting peptides to .txt directly from Discoverer.

Parameters:

path : str

pick_best_psm : bool, optional

Returns:

df : pandas.DataFrame