pyproteome.pypuniprot package

This module provides functionality for fetching protein data from UniProt.

Caches fetched protein data for faster re-use.

pyproteome.pypuniprot.fetch_uniprot_data(accessions)

Fetch UniProt protein descriptions, gene names, sequences, etc.

All information is stored in UNIPROT_DATA and can be accessed with get_uniprot_data().

Parameters:

accessions : list of str

Returns:

dict of str, dict

pyproteome.pypuniprot.get_uniprot_data(accession)

Get UniProt data associated with a protein.

Parameters:

accession : str

Returns:

data : dict

pyproteome.pypuniprot.prefetch_all_msf_uniprot()

Fetch data for all accesions found in MSF files in MS Searched directory.

pyproteome.pypuniprot.prefetch_all_uniprot()

Fetch data for all accesions found in MS Searched directory.

Pulls all UniProt accession IDs from all ‘_psms.txt’ files.